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Bioinformatic analysis of proteomics data
Most biochemical reactions in a cell are regulated by highly specialized proteins, which are the prime mediators of the cellular phenotype. Therefore the identification, quantitation and characterization of all proteins in a cell are of utmost importance to understand the molecular processes that mediate cellular physiology.
Proteomics data repositories - PubMed Central (PMC)
The field of proteomics, particularly the application of mass spectrometry analysis to protein samples, is well-established and growing rapidly. Proteomics studies generate large volumes of raw experimental data and inferred biological results. To facilitate the dissemination of these data ...
Proteomics - Wikipedia
Proteomics is the large-scale study of proteins.   Proteins are vital parts of living organisms, with many functions. The term proteomics was coined in 1997  in analogy with genomics , the study of the genome .
Proteomics Data Analysis (1/3): Data Acquisition and ...
This is the first of three tutorials on proteomics data analysis. I have outlined the steps to read and clean a typical mass spectrometry-based proteomics data set. In the next tutorial, we will examine the data in greater detail.
Proteomics Data Analysis | Agilent
Proteomics Data Analysis Agilent provides a comprehensive portfolio of software tools to support both discovery and targeted proteomics workflows. Our integrated solutions enable you to perform protein database searches and quality assessments, apply previous results to new experiments, create MRM methods, and build peptide spectral libraries.
Interpreting Proteomics Data - News Medical
Interpreting Proteomics Data with Gene Ontology Annotation. The biological relevance of the vast amount of identified proteins obtained has to be extracted through the use of functional annotation.
Proteomics Identifications Database - Wikipedia
The PRIDE (PRoteomics IDEntifications database) is a public data repository of mass spectrometry (MS) based proteomics data, and is maintained by the European Bioinformatics Institute as part of the Proteomics Team.
Proteomics Data Analysis | Thermo Fisher Scientific - US
Biological systems are complex, and that usually results in the design of complex experiments. Fast, powerful mass spectrometers routinely generate large data sets from proteomics analyses. A standard proteomics experiment involves not only the identification of the peptide or protein involved and ...
Proteomics: Everything you always wanted to know but were ...
The videos and slides below, from the 2012 Proteomics Workshop, provide a working knowledge of what proteomics is and how it can accelerate biologists’ and clinicians’ research. The focus of the workshop is on the most important technologies and experimental approaches used in modern mass spectrometry (MS)-based proteomics.
PRIDE Archive - The European Bioinformatics Institute
PRIDE Archive - proteomics data repository The PRIDE PRoteomics IDEntifications (PRIDE) database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence.